If you've installed BlueJ on your own personal machine, these settings will be remembered and you won't have to edit them again. If you work on the machines in the lab though, you'll need to double-check them each time before you submit an assignment.
Tools
menu in BlueJ and select Submit
. (If you don't see a "Tools" menu, close any code editing windows you might have open and look again.) You'll get a window like the one below. You don't need to do anything here except to click on the "Submit" button.
submission.defs
file inside the project folder. Oops. That's what tells BlueJ which files to submit, and where to put them on the server. If that's the case, please let me know. In the meantime, you can quit BlueJ, download this file into the project folder, then restart BlueJ and submit. That file uses some generic settings, but will at least let you submit.